biologia plantarum

International journal on Plant Life established by Bohumil Němec in 1959

Biologia plantarum 57:646-654, 2013 | DOI: 10.1007/s10535-013-0355-8

Gene expression of the oil palm transcription factor EgAP2-1 during fruit ripening and in response to ethylene and ABA treatments

V. Omidvar1,2, S. N. A. Abdullah1,2,*, M. Ebrahimi1, C. L. Ho2,3, M. Mahmood3
1 Department of Agriculture Technology, Faculty of Agriculture, University Putra Malaysia, Selangor, Malaysia
2 Laboratory of Plantation Crops, Institute of Tropical Agriculture, University Putra Malaysia, Selangor, Malaysia
3 Department of Cell and Molecular Biology, Faculty of Biotechnology and Biomolecular Sciences, University Putra Malaysia, Selangor, Malaysia

A cDNA encoding an ERE-binding protein (EgAP2-1) was isolated from the oil palm fruit mesocarp treated with ethylene using yeast one-hybrid assay. EgAP2-1 belongs to the AP2 subfamily of the APETALA2/ethylene-responsive factor (AP2/ERF) proteins and contains two highly conserved AP2/EREBP DNA-binding domains (DNA-BD). Sequence comparison of EgAP2-1 with other AP2 proteins revealed high conservation of the two AP2/EREBP domains and linker region among these proteins. Its protein was localized to the nucleus of onion epidermis cells and showed ERE-specific binding, transcriptional activation, and transactivation properties in yeast and in vitro. Its mRNA was highly expressed in oil palm mesocarp with elevated levels in ripening fruits but not in leaves and roots. EgAP2-1 was induced in mesocarp in response to ethylene and abscisic acid but not other hormonal stimuli, including methyl jasmonate and salicylic acid, and abiotic stresses including drought, cold, and high-salinity. Our results demonstrate a link between the regulation of EgAP2-1 expression and ethylene- and/or ABA-coordinated control of the fruit ripening and suggest a regulatory role for EgAP2-1 during fruit ripening and development in oil palm.

Keywords: abiotic stress; AP2, ERF; ethylene-responsive element; gene expression; yeast one-hybrid assay
Subjects: gene expression; transcription factor; fruit ripening; ethylene; abscisic acid; yeast one-hybrid assay; green fluorescent protein; ethylene-responsive element; dehydration-responsive element; methyl jasmonate; salicylic acid; salinity; water stress; temperature - low; oil palm; onion

Received: June 8, 2012; Accepted: January 16, 2013; Published: December 1, 2013  Show citation

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Omidvar, V., Abdullah, S.N.A., Ebrahimi, M., Ho, C.L., & Mahmood, M. (2013). Gene expression of the oil palm transcription factor EgAP2-1 during fruit ripening and in response to ethylene and ABA treatments. Biologia plantarum57(4), 646-654. doi: 10.1007/s10535-013-0355-8
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References

  1. Agarwal, P., Agarwal, P.K., Joshi, A.J., Sopory, S.K., Reddy, M.K.: Overexpression of PgDREB2A transcription factor enhances abiotic stress tolerance and activates downstream stress-responsive genes. - Mol. Biol. Rep. 37: 1125-1135, 2010. Go to original source...
  2. Aida, M., Beis, D., Heidstra, R., Willemsen, V., Bliloum, I., Galinham, C., Nussaumem, L., Nohm, Y.-S., Amasinom, R., Scheres, B.: The PLETHORA genes mediate patterning of the Arabidopsis root stem cell niche. - Cell 119: 109-120, 2004. Go to original source...
  3. Alonso, J.M., Stepanova, A.N., Leisse, T.J., Kim, C.J., Chen, H., Shinn, P., Stevenson, D.K., Zimmerman, J., Barajas, P., Cheuk, R., Gadrinab, C., Heller, C., Jeske, A., Koesema, E., Meyers, C.C., Parker, H., Prednis, L., Ansari, Y., Choy, N., Deen, H., Geralt, M., Hazari, N., Hom, E., Karnes, M., Mulholland, C., Ndubaku, R., Schmidt, I., Guzman, P., Aguilar-Henonin, L., Schmid, M., Weigel, D., Carter, D.E., Marchand, T., Risseeuw, E., Brogden, D., Zeko, A., Crosby, W.L., Berry, C.C., Ecker, J.R.: Genome-wide insertional mutagenesis of Arabidopsis thaliana. - Science 301: 653-657, 2003. Go to original source...
  4. Bourgis, F., Kilaru, A., Cao, X., Ngando-Ebongue, G.F., Drira, N., Ohlrogge, J.B., Arondel, V.: Comparative transcriptome and metabolite analysis of oil palm and date palm mesocarp that differ dramatically in carbon partitioning. - Proc. nat. Acad. Sci. USA 108: 12527-12532, 2011. Go to original source...
  5. Boutilier, K., Offringa, R., Sharma, V.K., Kieft, H., Ouellet, T., Zhang, L., Hattori, J., Liu, C.M., Van Lammeren, A.A., Miki, B.L., Custers, J.B., Van Lookeren, M.M.: Ectopic expression of BABY BOOM triggers a conversion from vegetative to embryonic growth. - Plant Cell 14: 1737-1749, 2002. Go to original source...
  6. Chung, M.Y., Vrebalov, J., Alba, R., Lee, J., McQuinn, R., Chung, J.D., Klein, P., Giovannoni, J.: A tomato (Solanum lycopersicum) APETALA2/ERF gene, SlAP2a, is a negative regulator of fruit ripening. - Plant J. 64: 936-947, 2010. Go to original source...
  7. Elliott, R.C., Betzner, A.S., Huttner, E., Oakes, M.P., Tucker, W.Q.J., Gerentes, D., Perez, P., Smyth, D.R.: AINTEGUMENTA, an APETALA2-like gene of Arabidopsis with pleiotropic roles in ovule development and floral organ growth. - Plant Cell 8: 155-168, 1996. Go to original source...
  8. El-Sharkawy, I., Kim, W.S., Jayasankar, S., Svircev, A.M., Brown, D.C.W.: Differential regulation of four members of the ACC synthase gene family in plum. - J. exp. Bot. 59: 2009-2027, 2008. Go to original source...
  9. El-Sharkawy, I., Sherif, S., Mila, I., Bouzayen, M., Jayasankar, S.: Molecular characterization of seven genes encoding ethylene-responsive transcriptional factors during plum fruit development and ripening. - J. exp. Bot. 60: 907-922, 2009. Go to original source...
  10. Fukao, T., Xu, K., Ronald, P.C., Bailey-Serres, J.: A variable cluster of ethylene response factor-like genes regulates metabolic and developmental acclimation responses to submergence in rice. - Plant Cell 18: 2021-2034, 2006. Go to original source...
  11. Guo, A.Y., Chen, X., Gao, G., Zhang, H., Zhu, Q.H., Liu, X.C., Zhong, Y.F., Gu, X., He, K., Luo, J.: PlantTFDB: a comprehensive plant transcription factor database. - Nucleic Acids Res. 36: 966-969, 2008. Go to original source...
  12. Hu, Y.X., Wang, Y.X., Liu, X.F., Li, J.Y.: Arabidopsis RAVI is downregulated by brassinosteroid and may act as a negative regulator during plant development. - Cell Res. 14: 8-15, 2004. Go to original source...
  13. Jofuku, K.D., Den Boer, B.G., Van Montagu, M., Okamuro, J.K.: Control of Arabidopsis flower and seed development by the homeotic gene APETALA2. - Plant Cell 6: 1211-1225, 1994. Go to original source...
  14. Klucher, K.M., Chow, H., Reiser, L., Fischer, R.L.: The AINTEGUMENTA gene of Arabidopsis required for ovule and female gametophyte development is related to the floral homeotic gene APETALA2. - Plant Cell 8: 137-153, 1996. Go to original source...
  15. Krizek, B.A.: AINTEGUMENTA and AINTEGUMENTALIKE6 act redundantly to regulate Arabidopsis floral growth and patterning. - Plant Physiol. 150: 1916-1929, 2009. Go to original source...
  16. Li, Y., Zhu, B., Xu, W., Zhu, H., Chen, A., Xie, Y., Shao, Y., Luo, Y.: LeERF1 positively modulated ethylene triple response on etiolated seedling, plant development and fruit ripening and softening in tomato. - Plant Cell Rep. 26: 1999-2008, 2007. Go to original source...
  17. Maes, T.: The inflorescence architecture of Petunia hybrida is modified by the Arabidopsis thaliana AP2 gene. - Dev. Genet. 25: 199-208.
  18. Manning, K., Poole, M., Hong, Y., Thompson, A.J., King, G.J., Giovannoni, J.J., Seymour, G.B.: A naturally occurring epigenetic mutation in a gene encoding an SBP-box transcription factor inhibits tomato fruit ripening. - Natur. Genet. 38: 948-952, 2006. Go to original source...
  19. Menke, F.L., Champion, A., Kijne, J.W., Memelink, J.: A novel jasmonate- and elicitor-responsive element in the periwinkle secondary metabolite biosynthetic gene Str interacts with a jasmonate and elicitor-inducible AP2-domain transcription factor, ORCA2. - EMBO J. 18: 4455-4463, 1999. Go to original source...
  20. Mizukami, Y., Fischer, R.L.: Plant organ size control: AINTEGUMENTA regulates growth and cell numbers during organogenesis. - Proc. nat. Acad. Sci. USA 97: 942-947, 2000. Go to original source...
  21. Moore, S., Vrebalov, J., Payton, P., Giovannoni, J.: Use of genomics tools to isolate key ripening genes and analyse fruit maturation in tomato. - J. exp. Bot. 53: 2023-2030, 2002. Go to original source...
  22. Morcillo, F., Gallard, A., Pillot, M., Jouannic, S., Aberlenc-Bertossi, F., Collin, M., Verdeil, J.L., Tregear, J.W.: EgAP2-1, an AINTEGUMENTA-like (AIL) gene expressed in meristematic and proliferating tissues of embryos in oil palm. - Planta 226: 1353-1362, 2007. Go to original source...
  23. Nakano, T., Suzuki, K., Fujimura, T., Shinshi, H.: Genomewide analysis of the ERF gene family in Arabidopsis and rice. - Plant Physiol. 140: 411-432, 2006. Go to original source...
  24. Nole-Wilson, S., Tranby, T.L., Krizek, B.A.: AINTEGUMENTA-like (AIL) genes are expressed in young tissues and may specify meristematic or division-competent states. - Plant mol. Biol. 57: 613-628, 2005. Go to original source...
  25. Ohme-Takagi, M., Shinshi, H.: Ethylene-inducible DNA binding proteins that interact with an ethylene-responsive element. - Plant Cell 7: 173-182, 1995. Go to original source...
  26. Ohto, M.A., Fischer, R.L., Goldberg, R.B., Nakamura, K., Harada, J.J.: Control of seed mass by APETALA2. - Proc. nat. Acad. Sci. USA 102: 3123-3128, 2005. Go to original source...
  27. Okamuro, J.K., Caster, B., Villarroel, R., Van Montagu, M., Jofuku, K.D.: The AP2 domain of APETALA2 defines a large new family of DNA binding proteins in Arabidopsis. - Proc. nat. Acad. Sci. USA 94: 7076-7081, 1997. Go to original source...
  28. Park, J.M., Park, C.J., Lee, S.B., Ham, B.K., Shin, R., Paek, K.H.: Overexpression of the tobacco Tsi1 gene encoding an EREBP/AP2-type transcription factor enhances resistance against pathogen attack and osmotic stress in tobacco. - Plant Cell 13: 1035-1046, 2001. Go to original source...
  29. Pirrello, J., Jaimes-Miranda, F., Sanchez-Ballesta, M.T., Tournier, B., Khalil-Ahmad, Q., Regad, F., Latche, A., Pech, J.C., Bouzayen, M.: Sl-ERF2, a tomato ethylene response factor involved in ethylene response and seed germination. - Plant Cell Physiol. 47: 1195-1205, 2006. Go to original source...
  30. Qin, J., Zuo, K., Zhao, J., Ling, H., Cao, Y., Qiu, C., Lia, F., Sun, X., Tang, K: Overexpression of GbERF confers alteration of ethylene-responsive gene expression and enhanced resistance to Pseudomonas syringae in transgenic tobacco. - J. Biosci. 31: 255-263, 2006. Go to original source...
  31. Quan, R., Hu, S., Zhang, Z., Zhang, H., Zhang, Z., Huang, R.: Overexpression of an ERF transcription factor TSRF1 improves rice drought tolerance. - Plant Biotechnol. J. 8: 1-13, 2010. Go to original source...
  32. Riano-Pachon, D.M., Ruzicic, S., Dreyer, I., Mueller-Roeber, B.: PlnTFDB: an integrative plant transcription factor database. - BMC Bioinformatics 8: 42-44, 2007. Go to original source...
  33. Sakuma, Y., Liu, Q., Dubouzet, J.G., Abe, H., Shinozaki, K., Yamaguchi-Shinozaki, K.: DNA-binding specificity of the ERF/AP2 domain of Arabidopsis DREBs, transcription factors involved in dehydration- and cold-inducible gene expression. - Biochem. biophys. Res. Commun. 290: 998-1009, 2002. Go to original source...
  34. Sharma, M.K., Kumar, R., Solanke, A.U., Sharma, R., Tyagi, A.K., Sharma, A.K.: Identification, phylogeny, and transcript profiling of ERF family genes during development and abiotic stress treatments in tomato. - Mol. Genet. Genomics 284: 455-475, 2010. Go to original source...
  35. Sharoni, A.M., Nuruzzaman, M., Satoh, K., Shimizu, T., Kondoh, H., Sasaya, T., Choi, I.R., Omura, T., Kikuchi, S.: Gene structures, classification and expression models of the AP2/EREBP transcription factor family in rice. - Plant Cell Physiol. 52: 344-360, 2011. Go to original source...
  36. Sohn, K.H., Lee, S.C., Jung, H.W., Hong, J.K., Hwang, B.K.: Expression and functional roles of the pepper pathogeninduced transcription factor RAV1 in bacterial disease resistance, and drought and salt stress tolerance. - Plant mol. Biol. 61: 897-915, 2006. Go to original source...
  37. Sun, S., Yu, J.P., Chen, F., Zhao, T.J., Fang, X.H., Li, Y.Q., Sui, S.F.: TINY, a dehydration-responsive element (DRE)-binding protein like transcription factor connecting the DRE- and ethylene responsive element-mediated signaling pathways in Arabidopsis. - J. biol. Chem. 283: 6261-6271, 2008. Go to original source...
  38. Tang, M., Sun, J., Liu, Y., Chen, F.: Isolation and functional characterization of the JcERF gene, a putative AP2/EREBP domain-containing transcription factor, in the woody oil plant Jatropha curcas. - Plant mol. Biol. 63: 419-428, 2007. Go to original source...
  39. Tournier, B.L., Sanchez-Ballesta, M.T., Jones, B., Pesquet, E., Regad, F., Latche, A., Pech, J.C., Bouzayen, M.: New members of the tomato ERF family show specific expression pattern and diverse DNA-binding capacity to the GCC box element. - FEBS Lett. 550: 149-154, 2003. Go to original source...
  40. Tranbarger, T.J., Dussert, S., Joe, T., Argout, X., Summo, M., Champion, A., Cros, D., Omore, A., Nouy, B., Morcillo, F.: Regulatory mechanisms underlying oil palm fruit mesocarp maturation, ripening, and functional specialization in lipid and carotenoid metabolism. - Plant Physiol. 156: 564-584, 2011. Go to original source...
  41. Vahala, T., Oxelman, B., Arnold, S.V.: Two APETALA2-like genes of Picea abies are differentially expressed during development. - J. exp. Bot. 52: 1111-1115, 2001. Go to original source...
  42. Van der Fits, L., Memelink, J.: The jasmonate-inducible AP2/ERF-domain transcription factor ORCA3 activates gene expression via interaction with a jasmonate-responsive promoter element. - Plant J. 25: 43-53, 2001. Go to original source...
  43. Wang, A., Tan, D., Takahashi, A., Li, T.Z., Harada, T.: MdERFs, two ethylene-response factors involved in apple fruit ripening. - J. exp. Bot. 58: 3743-3748, 2007. Go to original source...
  44. Würschum, T., Grob-Hardt, R., Laux, T.: APETALA2 regulates the stem cell niche in the Arabidopsis shoot meristem. - Plant Cell 18: 295-307, 2006. Go to original source...
  45. Yamaguchi, S.K., Shinozaki, K.: Transcriptional regulatory networks in cellular responses and tolerance to dehydration and cold stresses. - Annu. Rev. Plant Biol. 57: 781-803, 2006. Go to original source...
  46. Yin, X.R., Allan, A.C., Chen, K.S., Ferguson, I.B.: Kiwifruit EIL and ERF genes involved in regulating fruit ripening. - Plant Physiol. 153: 1280-1292, 2010. Go to original source...
  47. Zhang, H., Huang, Z., Xie, B., Chen, Q., Tian, X., Zhang, X., Zhang, H., Lu, X., Huang, D., Huang, R.: The ethylene-, jasmonate-, abscisic acid- and NaCl-responsive tomato transcription factor JERF1 modulates expression of GCC box-containing genes and salt tolerance in tobacco. - Planta 220: 262-270, 2004. Go to original source...
  48. Zhang, H., Yang, Y., Zhang, Z., Chen, J., Wang, X.C., Huang, R.: Expression of the ethylene response factor gene TSRF1 enhances abscisic acid responses during seedling development in tobacco. - Planta 228: 777-787, 2008. Go to original source...
  49. Zhang, M., Yuan, B., Leng, P.: The role of ABA in triggering ethylene biosynthesis and ripening of tomato fruit. - J. exp. Bot. 60: 1579-1588, 2009. Go to original source...
  50. Zhuang, J., Cai, B., Peng, R.H., Zhu, B., Jin, X.F.: Genomewide analysis of the AP2/ERF gene family in Populus trichocarpa. - Biochem. biophys. Res. Commun. 371: 468-474, 2008. Go to original source...