Paspalum fasciculatum Willd. ex Flüggé grows in mining soils which are Cd- and Pb-contaminated where it exhibits tolerance to Pb and the ability to extract Pb from these soils. To elucidate tolerance mechanisms to Pb-stress, liquid chromatography with tandem mass spectrometry (LC-MS/MS) was used to quantify changes in the accumulation of proteins in leaves. We identified 323 proteins involved in primary metabolism and response to biotic or abiotic stresses. Although proteins involved in the processes of photosynthesis and saccharide and energy metabolism presented the greatest amount of down-regulated proteins, the plant was able to maintain photosynthetic functions and obtain energy to sustain the vital balance. P. fasciculatum based their tolerance on increased antioxidant defenses, improving the protection and repair of proteins and transduction signals to coordinate physiological response to Pb-stress. Our results provide important information to understand the tolerance mechanisms in P. fasciculatum and could be important in future molecular studies on the resistance and accumulation of Pb in plants.

Leaves of Lotus japonicus infected by powdery mildew accumulate isoflavonoids, especially vestitol and sativan as protective compounds, whereas their flavonol-glycosides or phenylpropanoic acids content were rather decreased. For a better understanding of the induction of phytoalexin production in L. japonicus, the influence of important signalling molecules, namely methyl jasmonate and salicylic acid, was tested by leaf application, up to 15 d. No effects after spraying the leaves with 0.5 mM salicylic acid were observed regarding the plant isoflavonoid content, whereas methyl jasmonate showed moderate effect on vestitol accumulation. Chitosan application led to a strong increase in vestitol content, sativan and vestitol derivative also increased. In a similar way to the effect of powdery mildew infection, the content of ferulic acid and kaempferol glycosides decreased, except for one compound, identified as kaempferol-6-deoxyhexose, that is the result of acetylation of kaempferol glycosides. The application of chitosan also led to an approximately 2.5- to 3.5-fold increase in hydrogen peroxide content, indicating the involvement of H₂O₂ in the chitosan signalling pathway. The activity of key enzyme of the phenolic biosynthesis, phenylalanine amonia lyase (PAL), was stimulated as well as the expression of 3 PAL-isogenes (LjPAL4, LjPAL6, and LjPAL9), whereas LjPAL8 decreased. Moreover, the expression of two key enzymes of vestitol and sativan biosythesis: pterocarpan reductase and isoflavone synthase were also strongly induced. The data suggest that chitosan acts as an elicitor of the fungal attack in Lotus japonicus that do not lead to a general stimulation of the metabolism of phenols, but rather to a specific induction of isoflavonoid-phytoalexine production, especially for production of vestitol.

The cuticle is the first physical barrier between the plant and the outer environment. The cuticle is no longer viewed as a rigid "inert sealer". Components of the cuticle were found to be responsive in their function and chemical composition to environmental signals. Cuticle creation is energy-consuming and complicated. Thus, cuticle composition and renewal dynamics are precisely regulated. Activated plant immunity is also energy "expensive". We briefly summarised our knowledge of the involvement of cuticle in plant-microbe interactions. Changes in cuticle amount and composition affect plant resistance to pathogens and treatment with cutin monomers triggers plant immunity. However, our knowledge about the effects of activated plant immunity on cuticle is scarce. We hypothesise that activated immunity influences cuticle dynamics. Our in-silico gene expression analysis revealed that cuticle biosynthetic genes are modulated under conditions simulating activated immunity. The analysis indicates that the cuticle is not just a rigid component of a plant reaction to the pathogen attack. Strengthening of the cuticle could prevent pathogen penetration. However, inhibition of cuticle production could save the energy needed for plant immunity. We propose questions which should be addressed in future research. Answering them would lead to a better understanding of plant defence against pathogens.

The impact of climate change on the physiological processes of Norway spruce in Central Europe is a significant concern. The increased temperature and evaporative demand associated with climate change may negatively affect its photosynthesis and carbon-water balance. This study tests the combined effect of branch position, temperature (T) and water vapour pressure deficit (VPD) on net photosynthetic rate (P_N), water vapour stomatal conductance (g_s), and intrinsic water-use efficiency (WUE_i) of Norway spruce. More than 11 000 gas-exchange measurements during the summer of 2018 revealed that branch position significantly affects gas exchange and WUE_i of juvenile Norway spruce trees. Northern branches showed on average 21% increased P_N, 35% higher g_s, and 8% lower WUE_i compared to the southern branches (across T and VPD conditions). The P_N and g_s differences between the branches were temperature- and VPD-dependent. We observed the negative impact of raising temperature on gas exchange and WUE_i for both treatments, with a 40°C threshold causing a rapid decline in WUE_i. Variability of the southern branches' WUE_i at 42°C was abruptly increased due to the decoupling of P_N and g_s (low P_N, high g_s). Surprisingly, raising VPD showed no significant impact on WUE_i of Norway spruce. The results of this study provide necessary information for upscaling and process-based modelling of whole-crown gas exchange. Moreover, experimental studies of gas exchange should take into consideration the branch position effect to prevent possible bias errors.

Dendrobium williamsonii and Dendrobium cariniferum (Orchidaceae) are endangered perennial herbs, and they are very similar in morphology. Chloroplast genome sequencing technology provides a powerful tool for molecular analysis to get more infomation for phylogenetic analysis and identification of Dendrobium species. In this study, the complete chloroplast genomes of Dendrobium williamsonii and Dendrobium cariniferum were assembled and characterized using Illumina NovaSeq 6000. The genome sizes are 159 695 and 159 479 bp, including pairs of inverted repeats (27 055 and 27 024 bp) each separated by small single-copy regions (18 451 and 18 488 bp) and large single-copy regions (87 134 and 86 943 bp). The chloroplast genome overall GC content was 37.11% and 37.13%, respectively. Each chloroplast genome encoded the same number (147) of genes, including 88 protein-coding genes, 51 tRNA genes, and 8 rRNA genes. Comparative analysis of chloroplast genomes revealed the high degree of divergence included accD-psaL and ycf4 -cemA. The phylogenetic tree showed the two Dendrobium species formed only one small clade. A pair of primers that could effectively identify the two Dendrobium species were also screened. This study will provide theoretical basis for species identification, genetic breeding, and evolution of Dendrobium.

Bacterial leaf blight (BLB) is a common disease that affects rice development and yield. The effects of major nutrients, especially nitrogen, on rice BLB susceptibility have been considered when devising rational fertilization strategies. However, the defense mechanism of rice against BLB under phosphate (Pi)-deficient conditions remains uncertain. Jasmonic acid (JA) is a phytohormone produced by rice plants to respond to abiotic and biotic stresses. Here, the involvement of the JA pathway in rice response to Xanthomonas oryzae pv. oryzae (Xoo) under low Pi was investigated in two contrasting rice cultivars G299 and G22. Expressions of JA-related genes under low Pi and Pi-related genes under JA treatment were assessed. The resistant capacity of G299 and G22 against Xoo infection was also investigated. In the JA-sensitive and Pi-sensitive cv. G299, JA-related genes were highly expressed under low Pi, and low Pi-responsive genes were strongly upregulated under JA treatment. Neither JA nor Pi pathways were activated in the JA-tolerant and low Pi-tolerant cv. G22. Low Pi strongly enhanced rice resistance to Xoo in cv. G299. Our study demonstrated that Pi deficiency confers rice resistance to Xoo. The JA pathway modulates the response to low Pi, depending on the cultivar. Pi-response genes are involved in Pi stress and may participate in the regulation of overall plant growth under various abiotic stresses. These findings provide new insights into the interaction between phosphate deficiency and the JA pathway and the subsequent effect on plant disease resistance.

The ZmMYB30 is a member of the myeloblastosis (MYB) transcription factor superfamily, which has been shown to be a transcription regulator in abiotic stress tolerance in maize (Zea mays). To further identify the biological function of ZmMYB30 and reveal how its expression is induced in response to stress, we isolated the ZmMYB30 promoter and conducted a functional analysis. A 1461-bp promoter fragment was cloned and sequenced. Motif prediction using PlantCARE revealed several stress-responsive elements in the promoter sequence. Deletions in the promoter sequence affected the activity of the promoter and demonstrated that putative stress-responsive motifs, including TC-rich repeats (ATTCTCTAAC), abscisic acid responsive element (ABRE, ACGTG), and MYB binding site (MBS, CAACTG), played important roles in regulating the expression of ZmMYB30. Promoter β-glucuronidase (GUS) analysis also showed that GUS expression under the control of the ZmMYB30 promoter responded to drought and salinity. Many natural variations in the ZmMYB30 promoter sequence were found among 31 inbred maize lines, including 22 single nucleotide polymorphisms (SNPs), 17 insertion and deletion (InDels), and approximately 400-bp long deletions. The ZmMYB30 expression varied greatly among the different inbred lines. The long fragment deletion in the promoter region did not impair the ZmMYB30 expression, whereas SNP (-374) in the MBS motif in the 62R and LH82 lines greatly decreased the ZmMYB30 expression. A site-specific mutation in the MBS motif also decreased the expression of the reporter GUS gene driven by the ZmMYB30 promoter sequence. The expressions of three stress-responsive genes ZmSOS1, ZmSOS2, and ZmABF3 were found to be consistent with the ZmMYB30 expression. Our results provide new evidence to support the role of ZmMYB30 as an important regulator in maize stress tolerance.

Nucleotides are the basic elements of the genetic material, participate in bio-energetic processes, are cofactors and components of secondary metabolites, etc. Nucleotide hydrolases (nucleotidases) are phosphatases that remove the 5'-phosphate group from the nucleotides and play a crucial role in nucleotide metabolism. In this study, genes encoding putative nucleotidases in Phaseolus vulgaris have been identified, and the effect of methyl jasmonate (MeJA) on both nucleotidase activity and gene expression has been addressed. The predicted nucleotidase peptides include the conserved domains characteristic of the haloacid dehalogenase-like hydrolase superfamily. The analysis of the expression of the 11 identified genes in radicles of common bean seedlings elicited with MeJA showed that 3 of them are highly induced by this phytohormone in a dose-dependent manner. Nucleotidase activity in radicles from MeJA treated plants was higher than in not elicited seedlings, and this induction was observed with all the nucleotides assayed (mono-, di- or triphosphate) and with purine or pyrimidine nucleotides. MeJA is involved in biotic and abiotic stress, and the induction of nucleotide metabolism in response to this treatment suggests a relevant role for nucleotides in the seedlings response to unfavourable conditions.

Trehalose, which plays important roles in resistance to abiotic stresses and preservation of biological activity in plants, is synthesized by two key enzymes, trehalose-6-phosphate synthase (TPS) and trehalose-6-phosphate phosphatase (TPP). Therefore, the expressions of the TPS and TPP genes directly affect trehalose synthesis and stress resistance of plants. In this study, CkTPS and CkTPP from Caragana korshinskii were identified, and the role of trehalose synthesis in the adaptation of this desert plant to adverse conditions was investigated. Higher CkTPS and CkTPP expressions were observed in the roots, whereas expressions were much lower in leaves and stems, and their expressions were upregulated under drought stress. Histochemical analyses showed that β-glucuronidase expression driven by the CkTPS and CkTPP promoters was strongly induced by abiotic stresses and phytohormones, such as abscisic acid, gibberellin, methyl jasmonate, and mannitol, which suggests that trehalose synthesis may be regulated by various signaling pathways. To determine the functional mechanism underlying the role of trehalose synthesis in regulating drought response in plants, CkTPS and CkTPP were introduced into Arabidopsis. Compared to wild-type (WT) plants, these transgenic plants showed higher germination rate, survival, less damage, better shoot growth, and longer roots under drought stress. Moreover, transgenic plants had a significantly higher content of proline, chlorophyll, trehalose, and activities of antioxidant enzymes, including superoxide dismutase (SOD), peroxidase (POD) and catalase (CAT), and lower malondialdehyde (MDA) content than WT controls. Double-transgenic plants carrying CkTPS and CkTPP showed better growth and stronger drought tolerance than either single transgenic plant line. These results provide a theoretical and experimental basis for further understanding the function and regulatory mechanism of CkTPS and CkTPP, as well as the possibility of their application for improving drought tolerance in crops through genetic engineering.

To reveal the regulation mechanism of terpenoid biosynthesis in the leaves of Eucalyptus camaldulensis, the content of volatiles in eucalyptus leaves and the transcriptome databases of young and mature leaves were analyzed. The results showed that E. camaldulensis contains 92 and 89 kinds of volatile substances in the young and mature leaves, respectively. Among them, the content of 1,8-cineole, β-pinene, and other substances was significantly different in young and mature leaves. A total of 99 802 unigenes were obtained from the transcriptome database of young and mature leaves of E. camaldulensis and 18 441 genes displayed obviously differential expressions during both developmental stages. There were 6 982 up-regulated unigenes and 11 461 down-regulated unigenes in the young leaf stage compared to the mature leaf stage. The key genes for terpenoid biosynthesis, including limonene synthase-10, limonene synthase-11, myrcene synthase-1, α- pinene synthase-2, and 1,8-cineole synthase-2, were selected for further analysis to explore the mechanism of gene regulation and genetic transformation. The expressions of key genes were validated by RT-qPCR, and their expressions were consistent with RNA-seq data. WRKY, MYB, NAC, and bHLH transcription factors (TFs) displayed important regulatory effects on the above key genes. Thus, a regulatory network model of terpenoid biosynthesis was constructed using target genes and TFs during leaf development in E. camaldulensis. These results provide theoretical evidence for understanding the terpenoid biosynthesis in plants and reference for terpenoids utilization by genetic engineering methods in E. camaldulensis.

Glandular trichomes (GTs) are one of the epidermal tissues of medicinal plants which function in the synthesis, storage, and secretion of secondary metabolites. The active ingredients of Chinese medicinal materials are mostly secondary metabolites of plants. Accordingly, it is of great research value to explore the quality of medicinal materials using the GTs of medicinal plants as the starting point. However, most of the current studies on GTs of medicinal plants are still at the simple morphological identification stage, and there are few studies on the compounds secreted by GTs and secondary metabolic processes. Here, we reviewed the literature, summarized the morphological types of medicinal plant GTs, separation and purification technology, analysis technology, and biological activities of secondary metabolites, and established a research approach to medicinal plant GTs. We hope to provide a reference for future research on GT inclusions and secondary metabolism.

MicroRNAs (miRNAs) are small non-coding RNAs that play crucial regulatory roles in diverse developmental processes via cleavage or translational inhibition of their target mRNAs. Although a growing number of miRNAs and their targets have been predicted and discovered via experimentation in many plants, little is known about conserved miRNAs and their target genes in Pinus densata. In the present study, the conserved miRNAs, miR171 and miR482, from Pinus densata were characterized. Analysis of miR171 and miR482 reveal that these miRNAs were highly conserved in other plant species. In addition, the precursors of miR171 and miR482 were validated by real time-PCR and sequencing. Using real-time quantitative PCR, miR171 and miR482 as well as their corresponding targets were found to be differentially expressed in needles, stems, and roots of Pinus densata. Furthermore two target genes, one GRAS family transcription factor protein gene and one nucleotide-binding site leucine-rich repeat (NBS-LRR) resistance protein gene, were experimentally verified to be the targets of pde-miR171 and pde-miR482, respectively, using RNA ligase-mediated 5'-rapid amplification of cDNA ends (RLM-RACE).

Saccharides are a direct energy source for most organisms and the primary components in grains of common wheat (Triticum aestivum L., 2n = 6x = 42, AABBDD). However, genes involved in the metabolism of primary saccharides such as glucose and fructose have not been fully characterized in wheat, which limits our understanding of how these genes influence wheat growth. In this study, genes coding ATP-dependent phosphofructokinase (PFK), fructose-1,6-bisphosphatase (FBP), and pyrophosphate-dependent fructose-6-phosphate 1-phosphotransferase (PFP), which participate in the conversion between fructose 6-phosphate (F-6-P) and fructose 1,6-bisphosphate (F-1,6-P₂), were identified at the genome-wide level. A total of 24, 13, and 12 genes were found encoding TaPFK, TaFBP, and TaPFP, respectively. All predicted peptides of these genes exhibited conserved substrate-binding domain, suggesting they are active enzymes in vivo. Transcriptome data ranked the gene levels as follows: TacyFBP-1 > TacpFBP-1 > TaPFPα-2 ≈ TaPFPβ >> TaPFK-1 ≈ TaPFK-5 >> all remaining genes at different developmental stages of wheat. In the three tapfp-a, b, and d knockout lines, there was a decrease in the plant height, anther length, and thousand-grain mass, while the percentage of abnormal pollen increased compared to that of wild type cv. Huapei3 (HP3). During germination, tapfpβ-a exhibited a lower germination rate, shorter coleoptile and primary root length, and higher fructose content than HP3, tapfpβ-b, and tapfpβ-d lines. Expressions were ranked as follows: TaPFK-5 ≈ TaPFPα-2 >> TaPFPα-1 ≈ TaPFPβ > TacyFBP-1 ≈ TaPFK-7, 9 in HP3. All these genes were downregulated during the 24 - 96 h germinating process in three mutant lines. Collectively, main TaPFK, TaFBP, and TaPFP members cooperated during wheat growth, while TaPFPβ knockout decreased wheat vitality. Results from this study can aid more systematic studies of the physiological and molecular functions of TaPFK, TaFBP, and TaPFP.

Cytosine methylation plays an important role in plant development by regulating gene expressions. However, few studies have investigated methylation changes during the tissue differentiation and development of perennial plants. Here, the fluorescence-labeled methylation-sensitive amplified polymorphism method was used with eight primer combinations to detect methylation in leaves and xylem obtained at the stages of inflorescence emergence (IE), ovary start growth, and fruit maturity (FM) in two pecan (Carya illinoinensis) cvs. Pawnee and Stuart. The results show that the total methylation in the xylem was generally higher than in the leaves at each stage. Substantial methylation variations were observed at the amplified sites in pecan tissues at the various stages. The methylation patterns changed between the leaf and xylem, with frequencies from 44.97 to 67.01 % over the three stages in the two cultivars, among which the variation frequency between the tissues at the FM stage was the highest for each cultivar. The frequencies of methylation variation between the leaf samples at any two stages ranged from 31.86 to 45.88 %, with higher variation frequencies between the xylem samples (40.90 - 59.44 %) for each cultivar, which is consistent with the comparative results of polymorphism rates between the leaf and xylem over the three stages. Cluster analysis and principal coordinate analysis suggest that the xylem at the IE and FM stages had relatively distant epigenetic relationships with other tissue samples as a whole. This study reveals the patterns of methylation variation and methylation relationships among pecan tissues undergoing different developmental processes, implying the important roles of methylation in tissue differentiation and development of trees. These results lay a theoretical foundation for elucidating the regulatory mechanisms of methylation involved in tree development.

According to the survey, wild purslane (Portulaca oleracea L.) has two different ecotypes, one with the red stem living in an arid environment and one with the green stem living in a humid environment. In order to explore the physiological response strategies of plants to environmental changes, these two ecotypes of purslane were selected as experimental materials. Physiological indices were determined and transcriptome analysis was carried out to screen the differentially expressed genes (DEGs) from two ecotypes of purslane. The results showed that the content of soluble sugars, proline, anthocyanins, and chlorophylls was significantly different, and most DEGs belonged to the WRKY and NAC families. Finally, the results of transcriptome analysis were verified by real-time qPCR. Therefore, it can be inferred that the transcription factor (TF) families may play an important role in physiological response strategies by regulating the changes of anthocyanins and osmotic regulators (soluble sugars, proline, etc.) through the abscisic acid signalling pathway. This will accelerate the study of purslane at the molecular level, provide corresponding theoretical support for its artificial domestication, and drought breeding.

To explore the protective mechanisms of brassinosteroids in the chill-induced photoinhibition in tomato (Solanum lycopersicum), we studied the effect of foliar sprayed 24-epibrassinolide (EBR, 0.1µM) on the gas exchange, chlorophyll fluorescence characteristics, and chlorophyll a fluorescence transient in tomato seedlings under chilling stress (a temperature of 8 ℃ and an irradiance of 200 µmol m^-2 s^-1) for 4 d. Results showed that chilling significantly inhibited CO₂ assimilation and induced photoinhibition of photosystem II (PS II). However, photosystem I (PS I) was relatively tolerant to chilling stress, which was due to the downregulation of PS II activity and increase of cyclic electron transport around PS I (CEF). Chilling led to the inactivation of PS II reaction centers (RCs) and blocked the electron transport at the PS II acceptor side, but did not affect the oxygen-evolving complex (OEC) on the donor side of PS II. Exogenous EBR could alleviate chill-induced PS II photoinhibition mainly by the increase of CO₂ assimilation and thermal dissipation of excitation energy in the PS II antennae, while the protective effect of CEF was relatively smaller. This study demonstrated that EBR maintained the stability of the electron transport chain and the function of PS II in chilled tomatoes. EBR promoted the absorption (ABS/CS), trapping (TR_o/CS), and electron transport (ET_o/CS) per leaf area in tomatoes under chilling stress, which was due to increasing the density of active reaction centers (RC/CS), rather than the activity of active RCs.

Agarwood, the resin part of Aquilaria spp., is valued in medicine, perfumes, and incense. The most important components of agarwood are sesquiterpenes, which are produced only when a healthy tree is wounded. Agarwood sesquiterpene synthase 1 (ASS1) is one of key enzymes responsible for the biosynthesis of sesquiterpenes in Aquilaria sinensis (Lour.) Gilg, and it is a typical wound-inducible synthase. To elucidate its regulatory mechanism at the transcriptional level, a 978-bp sequence upstream of the translation initiation codon ATG of the promoter for ASS1 was cloned. Computational analysis revealed that this promoter contained many known cis-elements including several defense related transcriptional factor-binding boxes. To functionally validate the promoter, a 5' truncated fragment fused with the β-glucuronidase (GUS) reporter gene was used for generating stable transgenic Arabidopsis plants. The spatial and temporal expression patterns of GUS in transgenic Arabidopsis showed that the promoter of ASS1 was induced by mechanical wound and mainly expressed in vascular bundles. Subcellular localization showed that ASS1 localized in the nucleus and plasma membrane. Here, identification of the ASS1 promoter not only lays a foundation for studying its transcriptional regulation, but also provides clues for studying the synthesis mechanism of agarwood sesquiterpenes.

Decabromodiphenyl ether (BDE-209), a major component of brominated flame retardants, has been detected in considerable amounts in the soil. Given that BDE-209 is toxic, ubiquitous, and persistent, it may cause toxic effects on vegetables planted in contaminated soil. In this study, Chinese cabbage seedlings cultivated in the soil contaminated by BDE-209 (5 - 20 mg kg^-1) for 60 d were investigated to evaluate the phytotoxicity of BDE-209 in terms of growth, physiological responses, photosynthetic function, and antioxidant capacity. The results showed that BDE-209-induced phytotoxicity was reflected in the growth suppression, the decrease of chlorophyll content and soluble protein content, and especially in the reduced photosynthetic parameters (net photosynthetic rate and stomatal conductance). BDE-209 showed direct toxicities to plasma membranes causing their elevated permeability. In addition, BDE-209 induced the overproduction of reactive oxygen species (ROS), membrane lipid peroxidation and protein carbonylation, manifesting in the increased content of O₂^*-, H₂O₂, malondialdehyde, and carbonyl. Chinese cabbage seedlings activated the antioxidant defence system (superoxide dismutase and peroxidase) to scavenge the ROS and counter-balance the oxidative stress caused by BDE-209, while the toxicity could not be effectively alleviated. Our study will provide valuable information for further understanding of the phytotoxicity of polybrominated diphenyl ethers.

PopW, a harpin protein identified from Ralstonia solanacearum, has multiple beneficial effects in plants, promoting plant growth and development, increasing crop yield, and inducing resistance to pathogens. Tobacco plants transformed with popW, the PopW-encoding gene, exhibited a promoted growth rate and enhanced resistance to Tobacco mosaic virus (TMV). Here, it is documented that the transgenic tobacco plants overexpressing popW exhibited a higher resistance to R. solanacearum YN10 infection compared with that of the wild-type plants. In the popW-expressing tobacco lines, an enhanced H2O2 accumulation and hypersensitive reaction (HR) were activated in the inoculated site. In addition, the resistance was accompanied with increased transcripts in numbers of genes related to defense (including HR), reactive oxygen species (ROS) scavenging, and salicylic acid (SA), jasmonic acid (JA), and ethylene (ET) production. These results suggest that popW acted as positive regulator in tobacco resistance against R. solanacearum via modulation of SA-, JA-, and ET-mediated signaling pathways. We report for the first time that the expression of a harpin-encoding gene in vivo improved plant resistance to R. solanacearum.

The gene FRIGIDA (FRI) is floral repressor and plays a key role in the timing of Arabidopsis flowering. To study the function of FRI-like genes in bamboo, we isolated a FRI family gene from bamboo Phyllostachys violascens and named it PvFRI-L. Sequence alignment and phylogenetic analysis show that the PvFRI-L protein belongs to the FRL3 (III) subfamily from monocots and contains a conserved FRIGIDA domain. PvFRI-L was located in the nucleus of onion epidermal cells. PvFRI-L was expressed in all tested organs of flowering and non-flowering bamboo plants with a higher expression in non-flowering than in flowering plants. Overexpression of PvFRI-L in Arabidopsis caused late flowering by downregulating flowering locus T and upregulating flowering locus C. A P-box, the binding site involved in gibberellin response, was found only in the promoter region of PvFRI-L but not in that of FRI. Furthermore, PvFRI-L expression in the leaves of Ph. violascens seedlings was downregulated with gibberellic acid treatment. Taking together, our observation suggests that PvFRI-L may be flowering repressor and its delaying floral timing may be regulated by gibberellic acid in bamboo.

The trihelix genes encode plant-specific transcription factors, which play a vital role in plant morphological and developmental processes. However, information about the presence of trihelix genes in sunflower (Helianthus annuus L.) is scarce. Sunflower belongs to composite family and possesses strong drought and salt-alkali tolerance. In this study based on H. annuus genome data, we have identified and analyzed the trihelix genes with a complete description of their physical and chemical properties, phylogenetic relationships, motif composition, chromosome distribution, exon-intron structure, cis-acting elements, and chromosome collinearity. In H. annuus, 31 full-length trihelix genes were identified and categorized into six subgroups (SIP, GT1, SH4, Gδ, GT-γ, and GT2). Multiple Em for motif elicitation (MEME), used for conservative motif analysis, identified 10 distinct motifs unevenly distributed on 31 trihelix genes. In addition to that, chromosome localization analysis showed the number and distribution of these trihelix genes on 17 chromosomes of H. annuus. Transcriptional structure analysis revealed the structure of introns and exons of different gene members. Furthermore, cis-element analysis identified 19 different types of cis-elements mainly related to abiotic stress, hormones, and growth and development of plant. Results of this study manifested novel insights into phylogenetic relationships and possible functions of H. annuus trihelix genes. Moreover, these findings can assist in future studies regarding specific physiological effects of H. annuus trihelix transcription factors.

Late embryogenesis abundant (LEA) proteins are important for promoting the growth and stress tolerance of plants. They are widely involved in plant growth regulation and responses to hormones and environmental factors. However, knowledge of the functions of the LEA gene in ginseng species remains limited. In this study, a Panax ginseng LEA gene (PgLEA) expression vector was constructed, and stable transgenic Arabidopsis lines were established. The PgLEA protein was classified in the LEA-2 subgroup. Reverse-transcription quantitative PCR analysis showed that the expression of PgLEA increased under 300 mM NaCl or 10 % (m/v) polyethylene glycol treatments. Under salt and osmotic stresses, overexpression of PgLEA in transgenic Arabidopsis plants improved germination rate, root length, and survival rate compared to wild-type plants. In response to drought or salt stress, transgenic plants increased proline accumulation, decreased malonaldehyde content and ion leakage. Furthermore, the transgenic plants exhibited significantly increased activity of superoxide dismutase, peroxidase, and catalase, and reduced accumulation of hydrogen peroxide and superoxide. Moreover, overexpression of PgLEA affected the expression of genes related to salt/drought stress. Taken together, PgLEA is a positive regulator of drought and salinity stress, and positively functioned in pleiotropic effects through regulating osmotic balance, reactive oxygen species scavenging and inducing transcription of stress-related genes. PgLEA may enable ginseng plants to adapt to adverse environments. The data presented herein imply that PgLEA may be useful for breeding new stress-tolerant ginseng cultivars.

Festulolium are grasses formed through interspecific hybridisation of ryegrass (Lolium) and fescue (Festuca) species. The Lolium-Festuca genome complex represents a vast array of heterogeneous and largely outbreeding grass species that have evolved, diverged, and adapted, allowing their world-wide colonisation of temperate grasslands. While strategies for grass improvement have focused primarily on intraspecific breeding and, in particular, on the agronomically desirable species Lolium perenne and Lolium multiflorum, a growing interest has emerged in interspecific hybrids as alternatives. The principal driver has been the increased appreciation of the capability of wide hybridisation to extend phenotypic variation beyond the ranges available within a single species. Lolium and Festuca species share complementary and desirable traits, and the prime aim in Festulolium (Festuca × Lolium) cultivar development has been to combine the agronomic performance of Lolium and the stress resistance of Festuca species. Advances in Festulolium development are timely, and support strategies aimed at delivering a more sustainable future for livestock agriculture, with grass cultivars that are persistent and productive. Festulolium hybrids occur naturally, including examples that demonstrate extreme heterosis with adaptations sufficient to sustain growth in harsh conditions. However, they are largely sterile and their perpetuity depends mainly on vegetative propagation. Synthetic Festulolium hybrids suitable for plant breeding require genome stability and fertility, sufficient for a cost-effective seed production. To this end, suitable amphiploid and introgression-breeding approaches have been developed. Herein, we provide detailed selected highlights in the research and breeding of Festulolium. In addition, recognising the multifunctional properties of grasslands and the development of enabling technologies that permit their study, we review additional benefits likely to accrue from Festulolium that may mitigate climate change effects and provide valuable ecosystem services.

Atractylodes lancea (Thunb.) DC has been used widely as a medicinal herb for centuries and is now being used to treat COVID-19 pneumonia. Terpenoids are thought to be its main pharmacologically active constituents. However, their biosynthesis remains uncharacterized in this species. In this study, the terpene synthase gene AlTPS1 was cloned and functionally characterized. We found that AlTPS1 was a bifunctional enzyme that catalyzed the conversion of farnesyl diphosphate to nerolidol and geranyl diphosphate to linalool in vitro. However, it functioned only in the nerolidol production in vivo by transient expression of the AlTPS1 gene in Nicotiana benthamiana leaves maybe due to subcellular compartmentalization of the AlTPS1 in the cytosol. Furthermore, AlTPS1 was highly expressed in leaves, considered to be the sites of nerolidol synthesis. This study is the first in which the cloning and expression of the AlTPS1 gene from A. lancea were analyzed, and it has provided new insights into terpene biosynthesis in A. lancea.

The family of pyrabactin resistance 1 (PYR1)/PYR1-like (PYL) regulatory components of ABA receptors (RCAR) play a vital role in the initial step of ABA signaling. To understand the expression mode of PYL genes in response to various abiotic stresses in Chinese cabbage (Brassica rapa ssp. pekinensis), the members of BrPYL gene family were first identified with the relevant bioinformatics software. And then, the relative expressions of identified BrPYLs after heat, cold, drought, and salt treatments for 0, 24, 48, and 72 h were determined via real-time quantitative PCR. Here, we identified 24 PYLs in the B. rapa genome. Based on the phylogenetic analysis, these BrPYL genes were divided into three classes and distributed on ten chromosomes in Chinese cabbage. Most of BrPYL genes in the same group have similar gene structures and intron numbers. There were seven genes (BrPYL5, BrPYL8, BrPYL22, BrPYL3, BrPYL18, BrPYL11, and BrPYL21) from Group A with two introns and one gene (BrPYL19) from Group D with one intron. Analysis of conserved motifs suggested that every group contained motif 2 containing the Polyketide_cyc2 domain. Subsequently, the prediction of cis-acting elements indicated that BrPYL genes had 5 stress-related elements and 5 hormone-related elements, among which the number of MYC (dehydration reaction) was the highest, suggesting that BrPYL genes could respond to hormones and abiotic stresses. Expression patterns under four abiotic stresses showed that the expressions of BrPYL4, BrPYL11, BrPYL21, and BrPYL23 responded to these stresses at different time points. To conclude, we identified the BrPYL genes and build the BrPYLs expression mode in response to various abiotic stresses. This study provides a theoretical basis for stress-resistance breeding of Chinese cabbage.

In this study, the total and actual nitrate reductase (NR) activity, and NR activation state, in tomato seedlings (Solanum lycopersicum cvs. Kmicic and Faworyt) treated with okadaic acid (OA) was evaluated. Seedlings were grown in a half-strength Murashige and Skoog (MS) medium in a growth chamber at day/night temperatures of 22/20 °C, a photon flux density of 150 µmol m^-2 s^-1, and a 16-h photoperiod. After 10 days, plants were transferred into MS medium with 0 (control), 0.01, 0.05, 0.1, 0.5, 1.0 µM OA. It was found that the total and actual NR activity increased in Kmicic leaves treated with 0.1, 0.5, and 1.0 µM OA compared to control. However, the NR activation state did not change in both roots and leaves of OA-treated tomato seedlings.

Tomato yellow leaf curl virus (TYLCV), a whitefly-transmitted single-stranded DNA (ssDNA) virus, causes the most important viral disease of tomato worldwide. TYLCV-mediated disease is mainly controlled via extensive insecticide sprays aiming at the whitefly vector. RNA-based vaccination was proven to be a non-transgenic approach leading to efficient plant virus control. In this work, double-stranded RNA (dsRNA) molecules deriving from sequences of the C4 and V2 genes of TYLCV-Mild were produced in vitro and topically applied onto tomato plants along with the virus (via agroinfiltration). DsC4 and dsV2 application reduced disease incidence to 23 and 46 %, respectively, while TYLCV positive control reached 64 %. Bioinformatics analysis of the virus-specific small interfering RNAs (vsiRNAs) from TYLCV-infected tomato revealed 'hot' and 'cold' spots in the TYLCV-Mild genome. Interestingly, the viral C-strand had twofold siRNA reads when compared to that of the V-strand. Overall, vsiRNAs of negative and positive polarity were almost equal (53.5 vs. 46.6 %); vsiRNAs of negative polarity prevailed at the V-strand. Stem-loop RT-PCR validated the presence of six vsiRNAs (hot or cold spots) in TYLCV-Mild-infected and dsRNA-treated tomato. The exogenously applied dsRNA was found to rapidly move systemically in tomato and was detected for 54 days post treatment (dpt). The applied dsRNA molecules were successfully processed by the Dicer-like proteins (DCLs) in tomato since small interfering RNAs (siRNAs) deriving from the dsRNA were detected for at least 54 dpt. This consists the first report of dsRNA-based vaccination applied against a monopartite geminivirus.

The present work examines global transcriptional and limited metabolic profiling to dissect the signalling pathways associated with gibberellin A₃ (GA₃) induced alterations in tobacco (Nicotiana tabacum L.) under field conditions. Our microarray analysis revealed that GA3 foliar application elicited 7 032 differentially expressed genes (DEGs) with 3 507 and 3 525 genes displaying up- and down-regulation, respectively. These DEGs broadly belong to diverse metabolic pathways: GA signalling and homeostasis, ethylene and auxin biosyntheses, saccharide metabolism, glycolysistricarboxylic acid cycle, terpenoid biosynthesis, shikimate-phenylpropanoid pathway, S-adenosyl methionine cycle, fatty acid biosynthesis, cell wall metabolism, oxidative stress, DNA repair, and stress responses. Transcription validation of representative DEGs was confirmed by real-time quantitative PCR. A relative enhancement in cellular acetyl-CoA pool corroborated with a concomitant increase and decrease in transcriptions as well as activities of histone acetyltransferases and histone deacetylases, respectively. Phytochemical analysis shows an enhanced content of total sugars, reducing sugars, total flavonoids, and phenolics with a concomitant decrease of the content of starch, chlorophylls a and b, and carotenoids. Gas chromatography with mass spectrometry analysis revealed the presence of 30 differential metabolites, mostly belonging to terpenoid biosynthesis pathway.

Virus-induced gene silencing (VIGS) is a post-transcriptional gene silencing method used for unraveling gene functions. As an attractive alternative to mutant collections or stable transgenic plants, it has been widely used in reverse-genetics studies owing to its ease use and quick turnaround time. Turnip yellow mosaic virus (TYMV) has the ability to induce VIGS in Arabidopsis thaliana. However, the conventional vector construction is difficult and the efficiencies of the infection methods are low. Here, we improved the vector construction and viral infection methods, inserted an inverted-repeat fragment of the phytoene desaturase gene into a TYMV-derived vector by homologous recombination and transformed Brassica rapa with plasmid DNA harboring a cDNA copy of the TYMV genome through particle bombardment. An apparent photobleaching phenotype was detected and efficient VIGS was induced. An 80-bp fragment was sufficient to produce VIGS in leaves, stems, roots, flowers, siliques, and stalks of B. rapa. Because TYMV has a wide host range in Brassica, the VIGS system described here will contribute to the improvement of high-throughput technology and efficient functional research in B. rapa and other Brassicaceae crops.